Hello World Sample for R (#1664)

* Helloworld R sample

* readme

* actually save the readme

* Update Docker and app

* Update readme release

* Update readme to match code
This commit is contained in:
Averi Kitsch 2019-08-08 12:01:57 -07:00 committed by Knative Prow Robot
parent e1a90c498b
commit 1be53a692f
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Dockerfile
README.md
*.pyc
*.pyo
*.pyd
__pycache__

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# Use the official Python image.
# https://hub.docker.com/_/python
FROM python:3.7
# Copy local code to the container image.
ENV APP_HOME /app
WORKDIR $APP_HOME
COPY . .
# Install production dependencies.
RUN pip install Flask gunicorn
# Install R
RUN apt-get update && \
apt-get install -y r-base
# Run the web service on container startup. Here we use the gunicorn
# webserver, with one worker process and 8 threads.
# For environments with multiple CPU cores, increase the number of workers
# to be equal to the cores available.
CMD exec gunicorn --bind :$PORT --workers 1 --threads 8 app:app

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#!/usr/bin/Rscript
TARGET <- Sys.getenv("TARGET", "World")
message = paste("Hello ", TARGET, "!", sep = "")
print(message)

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---
title: "Hello World - R"
linkTitle: "R"
weight: 1
type: "docs"
---
A simple web app that executes an R script. The R script reads an env
variable `TARGET` and prints `Hello ${TARGET}!`. If the `TARGET` environment
variable is not specified, the script uses `World`.
Follow the steps below to create the sample code and then deploy the app to your
cluster. You can also download a working copy of the sample, by running the
following commands:
```shell
git clone -b "{{< branch >}}" https://github.com/knative/docs knative-docs
cd knative-docs/docs/serving/samples/hello-world/helloworld-r
```
## Before you begin
- A Kubernetes cluster with Knative installed. Follow the
[installation instructions](../../../../install/README.md) if you need to
create one.
- [Docker](https://www.docker.com) installed and running on your local machine,
and a Docker Hub account configured (we'll use it for a container registry).
## Recreating the sample code
1. Create a new file named `HelloWorld.R` and paste the following script:
```R
#!/usr/bin/Rscript
TARGET <- Sys.getenv("TARGET", "World")
message = paste("Hello ", TARGET, "!", sep = "")
print(message)
```
1. Create a new file named `app.py` and paste the following code. We use a
basic web server written in Python to execute the R script:
```py
import os
import subprocess
from flask import Flask
app = Flask(__name__)
@app.route('/')
def hello_world():
try:
output = subprocess.check_output('/usr/bin/Rscript HelloWorld.R', shell=True)
print(output)
except subprocess.CalledProcessError:
return "Error in R script.", 500
return output
if __name__ == "__main__":
app.run(debug=True,host='0.0.0.0',port=int(os.environ.get('PORT', 8080)))
```
1. Create a new file named `Dockerfile` and copy the code block below into it.
```docker
# Use the official Python image.
# https://hub.docker.com/_/python
FROM python:3.7
# Copy local code to the container image.
ENV APP_HOME /app
WORKDIR $APP_HOME
COPY . .
# Install production dependencies.
RUN pip install Flask gunicorn
# Install R
RUN apt-get update && \
apt-get install -y r-base
# Run the web service on container startup. Here we use the gunicorn
# webserver, with one worker process and 8 threads.
# For environments with multiple CPU cores, increase the number of workers
# to be equal to the cores available.
CMD exec gunicorn --bind :$PORT --workers 1 --threads 8 app:app
```
1. Create a new file, `service.yaml` and copy the following service definition
into the file. Make sure to replace `{username}` with your Docker Hub
username.
```yaml
apiVersion: serving.knative.dev/v1alpha1
kind: Service
metadata:
name: helloworld-r
namespace: default
spec:
template:
spec:
containers:
- image: docker.io/{username}/helloworld-r
env:
- name: TARGET
value: "R Sample v1"
```
## Building and deploying the sample
Once you have recreated the sample code files (or used the files in the sample
folder) you're ready to build and deploy the sample app.
1. Use Docker to build the sample code into a container. To build and push with
Docker Hub, run these commands replacing `{username}` with your Docker Hub
username:
```shell
# Build the container on your local machine
docker build -t {username}/helloworld-r .
# Push the container to docker registry
docker push {username}/helloworld-r
```
1. After the build has completed and the container is pushed to docker hub, you
can deploy the app into your cluster. Ensure that the container image value
in `service.yaml` matches the container you built in the previous step. Apply
the configuration using `kubectl`:
```shell
kubectl apply --filename service.yaml
```
1. Now that your service is created, Knative performs the following steps:
- Create a new immutable revision for this version of the app.
- Network programming to create a route, ingress, service, and load balance
for your app.
- Automatically scale your pods up and down (including to zero active pods).
1. Run the following command to find the external IP address for your service.
The ingress IP for your cluster is returned. If you just created your
cluster, you might need to wait and rerun the command until your service gets
asssigned an external IP address.
```shell
kubectl get svc knative-ingressgateway --namespace istio-system
```
Example:
```shell
NAME TYPE CLUSTER-IP EXTERNAL-IP PORT(S) AGE
knative-ingressgateway LoadBalancer 10.23.247.74 35.203.155.229 80:32380/TCP,443:32390/TCP,32400:32400/TCP 2d
```
1. Run the following command to find the domain URL for your service:
```shell
kubectl get ksvc helloworld-r --output=custom-columns=NAME:.metadata.name,URL:.status.url
```
Example:
```shell
NAME URL
helloworld-r http://helloworld-r.default.example.com
```
1. Test your app by sending it a request. Use the following `curl` command with
the domain URL `helloworld-r.default.example.com` and `EXTERNAL-IP`
address that you retrieved in the previous steps:
```shell
curl -H "Host: helloworld-r.default.example.com" http://{EXTERNAL_IP_ADDRESS}
```
Example:
```shell
curl -H "Host: helloworld-r.default.example.com" http://35.203.155.229
[1] "Hello R Sample v1!"
```
> Note: Add `-v` option to get more detail if the `curl` command failed.
## Removing the sample app deployment
To remove the sample app from your cluster, delete the service record:
```shell
kubectl delete --filename service.yaml
```

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import os
import subprocess
from flask import Flask
app = Flask(__name__)
@app.route('/')
def hello_world():
try:
output = subprocess.check_output('/usr/bin/Rscript HelloWorld.R', shell=True)
print(output)
except subprocess.CalledProcessError:
return "Error in R script.", 500
return output
if __name__ == "__main__":
app.run(debug=True,host='0.0.0.0',port=int(os.environ.get('PORT', 8080)))

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apiVersion: serving.knative.dev/v1alpha1
kind: Service
metadata:
name: helloworld-r
namespace: default
spec:
template:
spec:
containers:
- image: docker.io/akitsch/helloworld-r
env:
- name: TARGET
value: "R Sample v1"