Record TFX output artifacts in Metadata store (#884)
* WIP: ML Metadata in KFP * Move metadata tracking to its own package. * Clean up * Address review comments, update travis.yml * Add dependencies for building in Dockerfile * Log errors but continue to update run when metadata storing fails. * Update workspace to get latest ml-metadata version. * Update errors
This commit is contained in:
Ajay Gopinathan
Kubernetes Prow Robot
parent
dd1b11e4f8
commit
ba64bd3866
10
.travis.yml
10
.travis.yml
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@ -31,8 +31,14 @@ matrix:
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- cd $TRAVIS_BUILD_DIR/backend/src
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- gimme -f 1.11.4
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- source ~/.gimme/envs/go1.11.4.env
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- go vet -all -shadow ./...
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- go test ./...
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- go vet -all -shadow ./agent/...
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- go vet -all -shadow ./cmd/...
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- go vet -all -shadow ./common/...
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- go vet -all -shadow ./crd/...
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- go test ./agent/...
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- go test ./cmd/...
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- go test ./common/...
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- go test ./crd/...
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- language: python
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python: "2.7"
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env: TOXENV=py27
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@ -4,4 +4,8 @@ load("@bazel_gazelle//:def.bzl", "gazelle")
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# gazelle:resolve proto protoc-gen-swagger/options/annotations.proto @com_github_grpc_ecosystem_grpc_gateway//protoc-gen-swagger/options:options_proto
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# gazelle:resolve proto go protoc-gen-swagger/options/annotations.proto @com_github_grpc_ecosystem_grpc_gateway//protoc-gen-swagger/options:go_default_library
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# gazelle:resolve go github.com/kubeflow/pipelines/backend/api/go_client //backend/api:go_default_library
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# gazelle:resolve go ml_metadata/metadata_store/mlmetadata @google_ml_metadata//ml_metadata/metadata_store:metadata_store_go
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# gazelle:resolve go ml_metadata/proto/metadata_store_go_proto @google_ml_metadata//ml_metadata/proto:metadata_store_go_proto
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# gazelle:resolve go ml_metadata/proto/metadata_store_service_go_proto @google_ml_metadata//ml_metadata/proto:metadata_store_service_go_proto
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# gazelle:exclude vendor/
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gazelle(name = "gazelle")
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46
WORKSPACE
46
WORKSPACE
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@ -1,12 +1,13 @@
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load("@bazel_tools//tools/build_defs/repo:http.bzl", "http_archive")
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load("@bazel_tools//tools/build_defs/repo:http.bzl", "http_archive")
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http_archive(
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name = "io_bazel_rules_go",
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sha256 = "7be7dc01f1e0afdba6c8eb2b43d2fa01c743be1b9273ab1eaf6c233df078d705",
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urls = ["https://github.com/bazelbuild/rules_go/releases/download/0.16.5/rules_go-0.16.5.tar.gz"],
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sha256 = "492c3ac68ed9dcf527a07e6a1b2dcbf199c6bf8b35517951467ac32e421c06c1",
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urls = ["https://github.com/bazelbuild/rules_go/releases/download/0.17.0/rules_go-0.17.0.tar.gz"],
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)
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load("@io_bazel_rules_go//go:def.bzl", "go_register_toolchains", "go_rules_dependencies")
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load("@io_bazel_rules_go//go:deps.bzl", "go_register_toolchains", "go_rules_dependencies")
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go_rules_dependencies()
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@ -22,6 +23,45 @@ load("@bazel_gazelle//:deps.bzl", "gazelle_dependencies", "go_repository")
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gazelle_dependencies()
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http_archive(
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name = "org_tensorflow",
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sha256 = "24570d860d87dcfb936f53fb8dd30302452d0aa6b8b8537e4555c1bf839121a6",
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strip_prefix = "tensorflow-1.13.0-rc0",
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urls = [
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"https://github.com/tensorflow/tensorflow/archive/v1.13.0-rc0.tar.gz",
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],
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)
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http_archive(
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name = "io_bazel_rules_closure",
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sha256 = "43c9b882fa921923bcba764453f4058d102bece35a37c9f6383c713004aacff1",
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strip_prefix = "rules_closure-9889e2348259a5aad7e805547c1a0cf311cfcd91",
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urls = [
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"https://mirror.bazel.build/github.com/bazelbuild/rules_closure/archive/9889e2348259a5aad7e805547c1a0cf311cfcd91.tar.gz",
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"https://github.com/bazelbuild/rules_closure/archive/9889e2348259a5aad7e805547c1a0cf311cfcd91.tar.gz", # 2018-12-21
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],
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)
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load("@org_tensorflow//tensorflow:workspace.bzl", "tf_workspace")
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tf_workspace()
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load("@bazel_tools//tools/build_defs/repo:git.bzl", "new_git_repository")
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go_repository(
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name = "google_ml_metadata",
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commit = "becc26ab61f82bfe7c812894f56f597949ce0fdc",
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importpath = "github.com/google/ml-metadata",
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)
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new_git_repository(
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name = "libmysqlclient",
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build_file = "@google_ml_metadata//ml_metadata:libmysqlclient.BUILD",
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remote = "https://github.com/MariaDB/mariadb-connector-c.git",
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tag = "v3.0.8-release",
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workspace_file = "@google_ml_metadata//ml_metadata:libmysqlclient.WORKSPACE",
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)
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go_repository(
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name = "io_k8s_client_go",
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build_file_proto_mode = "disable_global",
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@ -1,25 +1,29 @@
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FROM golang:1.11-alpine3.7 as builder
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FROM l.gcr.io/google/bazel:0.21.0 as builder
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RUN apt-get update && \
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apt-get install -y cmake clang musl-dev openssl
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WORKDIR /go/src/github.com/kubeflow/pipelines
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COPY . .
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# Needed musl-dev for github.com/mattn/go-sqlite3
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RUN apk update && apk upgrade && \
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apk add --no-cache bash git openssh gcc musl-dev
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COPY WORKSPACE WORKSPACE
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COPY backend/src backend/src
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COPY backend/api backend/api
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RUN GO111MODULE=on go build -o /bin/apiserver backend/src/apiserver/*.go
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RUN bazel build -c opt --action_env=PATH --define=grpc_no_ares=true backend/src/apiserver:apiserver
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# Compile
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FROM python:3.5 as compiler
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RUN apt-get update -y && \
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apt-get install --no-install-recommends -y -q default-jdk wget
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RUN pip3 install setuptools==40.5.0
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RUN wget http://central.maven.org/maven2/io/swagger/swagger-codegen-cli/2.4.1/swagger-codegen-cli-2.4.1.jar -O /tmp/swagger-codegen-cli.jar
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# WORKDIR /go/src/github.com/kubeflow/pipelines
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WORKDIR /go/src/github.com/kubeflow/pipelines
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COPY . .
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COPY backend/api backend/api
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COPY sdk sdk
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WORKDIR /go/src/github.com/kubeflow/pipelines/sdk/python
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RUN ./build.sh /kfp.tar.gz
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RUN pip3 install /kfp.tar.gz
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@ -36,22 +40,21 @@ COPY ./samples .
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#The "for" loop breaks on all whitespace, so we either need to override IFS or use the "read" command instead.
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RUN find . -maxdepth 2 -name '*.py' -type f | while read pipeline; do dsl-compile --py "$pipeline" --output "$pipeline.tar.gz"; done
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FROM alpine:3.8
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FROM debian:stretch
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ARG COMMIT_SHA=unknown
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ENV COMMIT_SHA=${COMMIT_SHA}
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WORKDIR /bin
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COPY --from=builder /bin/apiserver /bin/apiserver
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COPY --from=builder /go/src/github.com/kubeflow/pipelines/third_party/license.txt /bin/license.txt
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COPY third_party/license.txt /bin/license.txt
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COPY --from=builder /go/src/github.com/kubeflow/pipelines/bazel-bin/backend/src/apiserver/linux_amd64_stripped/apiserver /bin/apiserver
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COPY backend/src/apiserver/config/ /config
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COPY --from=compiler /samples/ /samples/
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# Adding CA certificate so API server can download pipeline through URL
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RUN apk add ca-certificates
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RUN apt-get update && apt-get install -y ca-certificates
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# Expose apiserver port
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EXPOSE 8888
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@ -13,6 +13,7 @@ go_library(
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deps = [
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"//backend/api:go_default_library",
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"//backend/src/apiserver/client:go_default_library",
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"//backend/src/apiserver/metadata:go_default_library",
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"//backend/src/apiserver/model:go_default_library",
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"//backend/src/apiserver/resource:go_default_library",
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"//backend/src/apiserver/server:go_default_library",
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@ -23,12 +24,16 @@ go_library(
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"@com_github_cenkalti_backoff//:go_default_library",
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"@com_github_fsnotify_fsnotify//:go_default_library",
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"@com_github_golang_glog//:go_default_library",
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"@com_github_golang_protobuf//proto:go_default_library",
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"@com_github_grpc_ecosystem_grpc_gateway//runtime:go_default_library",
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"@com_github_jinzhu_gorm//:go_default_library",
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"@com_github_jinzhu_gorm//dialects/sqlite:go_default_library",
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"@com_github_minio_minio_go//:go_default_library",
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"@com_github_pkg_errors//:go_default_library",
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"@com_github_spf13_viper//:go_default_library",
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"@google_ml_metadata//ml_metadata/metadata_store:metadata_store_go", # keep
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"@google_ml_metadata//ml_metadata/proto:metadata_store_go_proto", # keep
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"@google_ml_metadata//ml_metadata/proto:metadata_store_service_go_proto", # keep
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"@org_golang_google_grpc//:go_default_library",
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"@org_golang_google_grpc//reflection:go_default_library",
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],
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@ -17,19 +17,25 @@ package main
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import (
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"database/sql"
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"fmt"
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"strconv"
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"time"
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workflowclient "github.com/argoproj/argo/pkg/client/clientset/versioned/typed/workflow/v1alpha1"
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"github.com/cenkalti/backoff"
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"github.com/golang/glog"
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"github.com/golang/protobuf/proto"
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"github.com/jinzhu/gorm"
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_ "github.com/jinzhu/gorm/dialects/sqlite"
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"github.com/kubeflow/pipelines/backend/src/apiserver/client"
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"github.com/kubeflow/pipelines/backend/src/apiserver/metadata"
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"github.com/kubeflow/pipelines/backend/src/apiserver/model"
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"github.com/kubeflow/pipelines/backend/src/apiserver/storage"
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"github.com/kubeflow/pipelines/backend/src/common/util"
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scheduledworkflowclient "github.com/kubeflow/pipelines/backend/src/crd/pkg/client/clientset/versioned/typed/scheduledworkflow/v1beta1"
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minio "github.com/minio/minio-go"
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"ml_metadata/metadata_store/mlmetadata"
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mlpb "ml_metadata/proto/metadata_store_go_proto"
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)
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const (
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@ -56,6 +62,8 @@ type ClientManager struct {
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swfClient scheduledworkflowclient.ScheduledWorkflowInterface
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time util.TimeInterface
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uuid util.UUIDGeneratorInterface
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MetadataStore *mlmetadata.Store
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}
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func (c *ClientManager) ExperimentStore() storage.ExperimentStoreInterface {
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@ -117,7 +125,6 @@ func (c *ClientManager) init() {
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c.experimentStore = storage.NewExperimentStore(db, c.time, c.uuid)
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c.pipelineStore = storage.NewPipelineStore(db, c.time, c.uuid)
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c.jobStore = storage.NewJobStore(db, c.time)
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c.runStore = storage.NewRunStore(db, c.time)
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c.resourceReferenceStore = storage.NewResourceReferenceStore(db)
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c.dBStatusStore = storage.NewDBStatusStore(db)
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c.objectStore = initMinioClient(getDurationConfig(initConnectionTimeout))
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@ -127,6 +134,11 @@ func (c *ClientManager) init() {
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c.swfClient = client.CreateScheduledWorkflowClientOrFatal(
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getStringConfig(podNamespace), getDurationConfig(initConnectionTimeout))
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metadataStore := initMetadataStore()
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runStore := storage.NewRunStore(db, c.time, metadataStore)
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c.runStore = runStore
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glog.Infof("Client manager initialized successfully")
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}
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@ -134,6 +146,30 @@ func (c *ClientManager) Close() {
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c.db.Close()
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}
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func initMetadataStore() *metadata.Store {
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port, err := strconv.Atoi(getStringConfig(mysqlServicePort))
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if err != nil {
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glog.Fatalf("Failed to parse valid MySQL service port from %q: %v", getStringConfig(mysqlServicePort), err)
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}
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cfg := &mlpb.ConnectionConfig{
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Config: &mlpb.ConnectionConfig_Mysql{
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&mlpb.MySQLDatabaseConfig{
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Host: proto.String(getStringConfig(mysqlServiceHost)),
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Port: proto.Uint32(uint32(port)),
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Database: proto.String("mlmetadata"),
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User: proto.String("root"),
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},
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},
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}
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mlmdStore, err := mlmetadata.NewStore(cfg)
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if err != nil {
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glog.Fatalf("Failed to create ML Metadata store: %v", err)
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}
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return metadata.NewStore(mlmdStore)
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}
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func initDBClient(initConnectionTimeout time.Duration) *storage.DB {
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driverName := getStringConfig("DBConfig.DriverName")
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var arg string
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|
|
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@ -35,6 +35,10 @@ import (
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"github.com/pkg/errors"
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"google.golang.org/grpc"
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"google.golang.org/grpc/reflection"
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_ "ml_metadata/metadata_store/mlmetadata"
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_ "ml_metadata/proto/metadata_store_go_proto"
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_ "ml_metadata/proto/metadata_store_service_go_proto"
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)
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var (
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@ -48,7 +52,6 @@ type RegisterHttpHandlerFromEndpoint func(ctx context.Context, mux *runtime.Serv
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func main() {
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flag.Parse()
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glog.Infof("starting API server")
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initConfig()
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clientManager := newClientManager()
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|
|
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|
|
@ -0,0 +1,27 @@
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load("@io_bazel_rules_go//go:def.bzl", "go_library", "go_test")
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go_library(
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name = "go_default_library",
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srcs = ["metadata_store.go"],
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importpath = "github.com/kubeflow/pipelines/backend/src/apiserver/metadata",
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visibility = ["//visibility:public"],
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deps = [
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"//backend/src/common/util:go_default_library",
|
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"@com_github_argoproj_argo//pkg/apis/workflow/v1alpha1:go_default_library",
|
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"@com_github_golang_protobuf//jsonpb:go_default_library_gen",
|
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"@com_github_golang_protobuf//proto:go_default_library",
|
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"@google_ml_metadata//ml_metadata/metadata_store:metadata_store_go",
|
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"@google_ml_metadata//ml_metadata/proto:metadata_store_go_proto",
|
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],
|
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)
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|
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go_test(
|
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name = "go_default_test",
|
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srcs = ["metadata_store_test.go"],
|
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embed = [":go_default_library"],
|
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deps = [
|
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"@com_github_golang_protobuf//proto:go_default_library",
|
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"@com_github_google_go_cmp//cmp:go_default_library",
|
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"@google_ml_metadata//ml_metadata/proto:metadata_store_go_proto",
|
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],
|
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)
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|
|
@ -0,0 +1,127 @@
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package metadata
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|
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import (
|
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"encoding/json"
|
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"ml_metadata/metadata_store/mlmetadata"
|
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mlpb "ml_metadata/proto/metadata_store_go_proto"
|
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"strings"
|
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|
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argoWorkflow "github.com/argoproj/argo/pkg/apis/workflow/v1alpha1"
|
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"github.com/golang/protobuf/jsonpb"
|
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"github.com/golang/protobuf/proto"
|
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"github.com/kubeflow/pipelines/backend/src/common/util"
|
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)
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|
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// Store encapsulates a ML Metadata store.
|
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type Store struct {
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mlmdStore *mlmetadata.Store
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}
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|
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// NewStore creates a new Store, using mlmdStore as the backing ML Metadata
|
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// store.
|
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func NewStore(mlmdStore *mlmetadata.Store) *Store {
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return &Store{mlmdStore: mlmdStore}
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}
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|
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// RecordOutputArtifacts records metadata on artifacts as parsed from the Argo
|
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// output parameters in currentManifest. storedManifest represents the currently
|
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// stored manifest for the run with id runID, and is used to ensure metadata is
|
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// recorded at most once per artifact.
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func (s *Store) RecordOutputArtifacts(runID, storedManifest, currentManifest string) error {
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storedWorkflow := &argoWorkflow.Workflow{}
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if err := json.Unmarshal([]byte(storedManifest), storedWorkflow); err != nil {
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return util.NewInternalServerError(err, "unmarshaling workflow failed")
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}
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|
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currentWorkflow := &argoWorkflow.Workflow{}
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if err := json.Unmarshal([]byte(currentManifest), currentWorkflow); err != nil {
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return util.NewInternalServerError(err, "unmarshaling workflow failed")
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}
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|
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completed := make(map[string]bool)
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for _, n := range storedWorkflow.Status.Nodes {
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if n.Completed() {
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completed[n.ID] = true
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}
|
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}
|
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|
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for _, n := range currentWorkflow.Status.Nodes {
|
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if n.Completed() && !completed[n.ID] {
|
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// Newly completed node. Record output ml-metadata artifacts.
|
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if n.Outputs != nil {
|
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for _, output := range n.Outputs.Parameters {
|
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if !strings.HasPrefix(output.ValueFrom.Path, "/output/ml_metadata/") {
|
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continue
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}
|
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|
||||
artifacts, err := parseTFXMetadata(*output.Value)
|
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if err != nil {
|
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return util.NewInvalidInputError("metadata parsing failure: %v", err)
|
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}
|
||||
|
||||
if err := s.storeArtifacts(artifacts); err != nil {
|
||||
return util.NewInvalidInputError("artifact storing failure: %v", err)
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
return nil
|
||||
}
|
||||
|
||||
func (s *Store) storeArtifacts(artifacts artifactStructs) error {
|
||||
for _, a := range artifacts {
|
||||
id, err := s.mlmdStore.PutArtifactType(
|
||||
a.ArtifactType, &mlmetadata.PutTypeOptions{AllFieldsMustMatch: true})
|
||||
if err != nil {
|
||||
return util.NewInternalServerError(err, "failed to register artifact type")
|
||||
}
|
||||
a.Artifact.TypeId = proto.Int64(int64(id))
|
||||
_, err = s.mlmdStore.PutArtifacts([]*mlpb.Artifact{a.Artifact})
|
||||
if err != nil {
|
||||
return util.NewInternalServerError(err, "failed to record artifact")
|
||||
}
|
||||
}
|
||||
return nil
|
||||
}
|
||||
|
||||
type artifactStruct struct {
|
||||
ArtifactType *mlpb.ArtifactType `json:"artifact_type"`
|
||||
Artifact *mlpb.Artifact `json:"artifact"`
|
||||
}
|
||||
|
||||
func (a *artifactStruct) UnmarshalJSON(b []byte) error {
|
||||
errorF := func(err error) error {
|
||||
return util.NewInvalidInputError("JSON Unmarshal failure: %v", err)
|
||||
}
|
||||
|
||||
jsonMap := make(map[string]*json.RawMessage)
|
||||
if err := json.Unmarshal(b, &jsonMap); err != nil {
|
||||
return errorF(err)
|
||||
}
|
||||
|
||||
a.ArtifactType = &mlpb.ArtifactType{}
|
||||
a.Artifact = &mlpb.Artifact{}
|
||||
|
||||
if err := jsonpb.UnmarshalString(string(*jsonMap["artifact_type"]), a.ArtifactType); err != nil {
|
||||
return errorF(err)
|
||||
}
|
||||
|
||||
if err := jsonpb.UnmarshalString(string(*jsonMap["artifact"]), a.Artifact); err != nil {
|
||||
return errorF(err)
|
||||
}
|
||||
|
||||
return nil
|
||||
}
|
||||
|
||||
type artifactStructs []*artifactStruct
|
||||
|
||||
func parseTFXMetadata(value string) (artifactStructs, error) {
|
||||
var tfxArtifacts artifactStructs
|
||||
|
||||
if err := json.Unmarshal([]byte(value), &tfxArtifacts); err != nil {
|
||||
return nil, util.NewInternalServerError(err, "parse TFX metadata failure")
|
||||
}
|
||||
return tfxArtifacts, nil
|
||||
}
|
||||
|
|
@ -0,0 +1,122 @@
|
|||
package metadata
|
||||
|
||||
import (
|
||||
"fmt"
|
||||
mlpb "ml_metadata/proto/metadata_store_go_proto"
|
||||
"testing"
|
||||
|
||||
"github.com/golang/protobuf/proto"
|
||||
"github.com/google/go-cmp/cmp"
|
||||
)
|
||||
|
||||
func (as artifactStructs) String() string {
|
||||
var s string
|
||||
for _, a := range as {
|
||||
s += fmt.Sprintf("%+v\n", a)
|
||||
}
|
||||
return s
|
||||
}
|
||||
|
||||
func TestParseValidTFXMetadata(t *testing.T) {
|
||||
tests := []struct {
|
||||
input string
|
||||
want artifactStructs
|
||||
}{
|
||||
{
|
||||
`[{
|
||||
"artifact_type": {
|
||||
"name": "Artifact",
|
||||
"properties": {"state": "STRING", "span": "INT" } },
|
||||
"artifact": {
|
||||
"uri": "/location",
|
||||
"properties": {
|
||||
"state": {"stringValue": "complete"},
|
||||
"span": {"intValue": 10} }
|
||||
}
|
||||
}]`,
|
||||
[]*artifactStruct{
|
||||
&artifactStruct{
|
||||
ArtifactType: &mlpb.ArtifactType{
|
||||
Name: proto.String("Artifact"),
|
||||
Properties: map[string]mlpb.PropertyType{
|
||||
"state": mlpb.PropertyType_STRING,
|
||||
"span": mlpb.PropertyType_INT,
|
||||
},
|
||||
},
|
||||
Artifact: &mlpb.Artifact{
|
||||
Uri: proto.String("/location"),
|
||||
Properties: map[string]*mlpb.Value{
|
||||
"state": &mlpb.Value{Value: &mlpb.Value_StringValue{"complete"}},
|
||||
"span": &mlpb.Value{Value: &mlpb.Value_IntValue{10}},
|
||||
},
|
||||
},
|
||||
},
|
||||
},
|
||||
},
|
||||
{
|
||||
`[{
|
||||
"artifact_type": {
|
||||
"name": "Artifact 1",
|
||||
"properties": {"state": "STRING", "span": "INT" } },
|
||||
"artifact": {
|
||||
"uri": "/location 1",
|
||||
"properties": {
|
||||
"state": {"stringValue": "complete"},
|
||||
"span": {"intValue": 10} }
|
||||
}
|
||||
},
|
||||
{
|
||||
"artifact_type": {
|
||||
"name": "Artifact 2",
|
||||
"properties": {"state": "STRING", "span": "INT" } },
|
||||
"artifact": {
|
||||
"uri": "/location 2",
|
||||
"properties": {
|
||||
"state": {"stringValue": "complete"},
|
||||
"span": {"intValue": 10} }
|
||||
}
|
||||
}]`,
|
||||
[]*artifactStruct{
|
||||
&artifactStruct{
|
||||
ArtifactType: &mlpb.ArtifactType{
|
||||
Name: proto.String("Artifact 1"),
|
||||
Properties: map[string]mlpb.PropertyType{
|
||||
"state": mlpb.PropertyType_STRING,
|
||||
"span": mlpb.PropertyType_INT,
|
||||
},
|
||||
},
|
||||
Artifact: &mlpb.Artifact{
|
||||
Uri: proto.String("/location 1"),
|
||||
Properties: map[string]*mlpb.Value{
|
||||
"state": &mlpb.Value{Value: &mlpb.Value_StringValue{"complete"}},
|
||||
"span": &mlpb.Value{Value: &mlpb.Value_IntValue{10}},
|
||||
},
|
||||
},
|
||||
},
|
||||
&artifactStruct{
|
||||
ArtifactType: &mlpb.ArtifactType{
|
||||
Name: proto.String("Artifact 2"),
|
||||
Properties: map[string]mlpb.PropertyType{
|
||||
"state": mlpb.PropertyType_STRING,
|
||||
"span": mlpb.PropertyType_INT,
|
||||
},
|
||||
},
|
||||
Artifact: &mlpb.Artifact{
|
||||
Uri: proto.String("/location 2"),
|
||||
Properties: map[string]*mlpb.Value{
|
||||
"state": &mlpb.Value{Value: &mlpb.Value_StringValue{"complete"}},
|
||||
"span": &mlpb.Value{Value: &mlpb.Value_IntValue{10}},
|
||||
},
|
||||
},
|
||||
},
|
||||
},
|
||||
},
|
||||
}
|
||||
|
||||
for _, test := range tests {
|
||||
got, err := parseTFXMetadata(test.input)
|
||||
if err != nil || !cmp.Equal(got, test.want) {
|
||||
t.Errorf("parseTFXMetadata(%q)\nGot:\n<%+v, %+v>\nWant:\n%+v, nil error\nDiff:\n%s", test.input, got, err, test.want, cmp.Diff(test.want, got))
|
||||
}
|
||||
}
|
||||
}
|
||||
|
|
@ -58,12 +58,13 @@ func NewFakeClientManager(time util.TimeInterface, uuid util.UUIDGeneratorInterf
|
|||
return nil, err
|
||||
}
|
||||
|
||||
// TODO(neuromage): Pass in metadata.Store instance for tests as well.
|
||||
return &FakeClientManager{
|
||||
db: db,
|
||||
experimentStore: storage.NewExperimentStore(db, time, uuid),
|
||||
pipelineStore: storage.NewPipelineStore(db, time, uuid),
|
||||
jobStore: storage.NewJobStore(db, time),
|
||||
runStore: storage.NewRunStore(db, time),
|
||||
runStore: storage.NewRunStore(db, time, nil),
|
||||
workflowClientFake: NewWorkflowClientFake(),
|
||||
resourceReferenceStore: storage.NewResourceReferenceStore(db),
|
||||
dBStatusStore: storage.NewDBStatusStore(db),
|
||||
|
|
|
|||
|
|
@ -361,6 +361,7 @@ func (r *ResourceManager) DeleteJob(jobID string) error {
|
|||
func (r *ResourceManager) ReportWorkflowResource(workflow *util.Workflow) error {
|
||||
runId := string(workflow.UID)
|
||||
jobId := workflow.ScheduledWorkflowUUIDAsStringOrEmpty()
|
||||
|
||||
if jobId == "" {
|
||||
// If a run doesn't have owner UID, it's a one-time run created by Pipeline API server.
|
||||
// In this case the DB entry should already been created when argo workflow CRD is created.
|
||||
|
|
|
|||
|
|
@ -24,6 +24,7 @@ go_library(
|
|||
"//backend/api:go_default_library",
|
||||
"//backend/src/apiserver/common:go_default_library",
|
||||
"//backend/src/apiserver/list:go_default_library",
|
||||
"//backend/src/apiserver/metadata:go_default_library",
|
||||
"//backend/src/apiserver/model:go_default_library",
|
||||
"//backend/src/common/util:go_default_library",
|
||||
"@com_github_ghodss_yaml//:go_default_library",
|
||||
|
|
@ -35,6 +36,9 @@ go_library(
|
|||
"@com_github_minio_minio_go//:go_default_library",
|
||||
"@com_github_pkg_errors//:go_default_library",
|
||||
"@com_github_vividcortex_mysqlerr//:go_default_library",
|
||||
"@google_ml_metadata//ml_metadata/metadata_store:metadata_store_go", # keep
|
||||
"@google_ml_metadata//ml_metadata/proto:metadata_store_go_proto", # keep
|
||||
"@google_ml_metadata//ml_metadata/proto:metadata_store_service_go_proto", # keep
|
||||
"@io_k8s_apimachinery//pkg/util/json:go_default_library",
|
||||
],
|
||||
)
|
||||
|
|
|
|||
|
|
@ -20,9 +20,11 @@ import (
|
|||
|
||||
sq "github.com/Masterminds/squirrel"
|
||||
"github.com/golang/glog"
|
||||
|
||||
api "github.com/kubeflow/pipelines/backend/api/go_client"
|
||||
"github.com/kubeflow/pipelines/backend/src/apiserver/common"
|
||||
"github.com/kubeflow/pipelines/backend/src/apiserver/list"
|
||||
"github.com/kubeflow/pipelines/backend/src/apiserver/metadata"
|
||||
"github.com/kubeflow/pipelines/backend/src/apiserver/model"
|
||||
"github.com/kubeflow/pipelines/backend/src/common/util"
|
||||
"k8s.io/apimachinery/pkg/util/json"
|
||||
|
|
@ -59,6 +61,7 @@ type RunStore struct {
|
|||
db *DB
|
||||
resourceReferenceStore *ResourceReferenceStore
|
||||
time util.TimeInterface
|
||||
metadataStore *metadata.Store
|
||||
}
|
||||
|
||||
// Runs two SQL queries in a transaction to return a list of matching runs, as well as their
|
||||
|
|
@ -350,6 +353,33 @@ func (s *RunStore) CreateRun(r *model.RunDetail) (*model.RunDetail, error) {
|
|||
}
|
||||
|
||||
func (s *RunStore) UpdateRun(runID string, condition string, workflowRuntimeManifest string) (err error) {
|
||||
tx, err := s.db.DB.Begin()
|
||||
if err != nil {
|
||||
return util.NewInternalServerError(err, "transaction creation failed")
|
||||
}
|
||||
|
||||
// Lock the row for update, so we ensure no other update of the same run
|
||||
// happens while we're parsing it for metadata. We rely on per-row updates
|
||||
// being synchronous, so metadata can be recorded at most once. Right now,
|
||||
// persistence agent will call UpdateRun all the time, even if there is nothing
|
||||
// new in the status of an Argo manifest. This means we need to keep track
|
||||
// manually here on what the previously updated state of the run is, to ensure
|
||||
// we do not add duplicate metadata. Hence the locking below.
|
||||
row := tx.QueryRow("SELECT WorkflowRuntimeManifest FROM run_details WHERE UUID = ? FOR UPDATE", runID)
|
||||
var storedManifest string
|
||||
if err := row.Scan(&storedManifest); err != nil {
|
||||
tx.Rollback()
|
||||
return util.NewInternalServerError(err, "failed to find row with run id %q", runID)
|
||||
}
|
||||
|
||||
if s.metadataStore != nil {
|
||||
if err := s.metadataStore.RecordOutputArtifacts(runID, storedManifest, workflowRuntimeManifest); err != nil {
|
||||
// Metadata storage failed. Log the error here, but continue to allow the run
|
||||
// to be updated as per usual.
|
||||
glog.Errorf("Failed to record output artifacts: %+v", err)
|
||||
}
|
||||
}
|
||||
|
||||
sql, args, err := sq.
|
||||
Update("run_details").
|
||||
SetMap(sq.Eq{
|
||||
|
|
@ -358,17 +388,23 @@ func (s *RunStore) UpdateRun(runID string, condition string, workflowRuntimeMani
|
|||
Where(sq.Eq{"UUID": runID}).
|
||||
ToSql()
|
||||
if err != nil {
|
||||
tx.Rollback()
|
||||
return util.NewInternalServerError(err,
|
||||
"Failed to create query to update run %s. error: '%v'", runID, err.Error())
|
||||
}
|
||||
result, err := s.db.Exec(sql, args...)
|
||||
result, err := tx.Exec(sql, args...)
|
||||
if err != nil {
|
||||
tx.Rollback()
|
||||
return util.NewInternalServerError(err,
|
||||
"Failed to update run %s. error: '%v'", runID, err.Error())
|
||||
}
|
||||
if r, _ := result.RowsAffected(); r != 1 {
|
||||
tx.Rollback()
|
||||
return util.NewInvalidInputError("Failed to update run %s. Row not found.", runID)
|
||||
}
|
||||
if err := tx.Commit(); err != nil {
|
||||
return util.NewInternalServerError(err, "failed to commit transaction")
|
||||
}
|
||||
return nil
|
||||
}
|
||||
|
||||
|
|
@ -510,7 +546,13 @@ func (s *RunStore) toRunMetadatas(models []model.ListableDataModel) []model.Run
|
|||
return runMetadatas
|
||||
}
|
||||
|
||||
// factory function for run store
|
||||
func NewRunStore(db *DB, time util.TimeInterface) *RunStore {
|
||||
return &RunStore{db: db, resourceReferenceStore: NewResourceReferenceStore(db), time: time}
|
||||
// NewRunStore creates a new RunStore. If metadataStore is non-nil, it will be
|
||||
// used to record artifact metadata.
|
||||
func NewRunStore(db *DB, time util.TimeInterface, metadataStore *metadata.Store) *RunStore {
|
||||
return &RunStore{
|
||||
db: db,
|
||||
resourceReferenceStore: NewResourceReferenceStore(db),
|
||||
time: time,
|
||||
metadataStore: metadataStore,
|
||||
}
|
||||
}
|
||||
|
|
|
|||
|
|
@ -33,7 +33,7 @@ func initializeRunStore() (*DB, *RunStore) {
|
|||
expStore.CreateExperiment(&model.Experiment{Name: "exp1"})
|
||||
expStore = NewExperimentStore(db, util.NewFakeTimeForEpoch(), util.NewFakeUUIDGeneratorOrFatal(defaultFakeExpIdTwo, nil))
|
||||
expStore.CreateExperiment(&model.Experiment{Name: "exp2"})
|
||||
runStore := NewRunStore(db, util.NewFakeTimeForEpoch())
|
||||
runStore := NewRunStore(db, util.NewFakeTimeForEpoch(), nil)
|
||||
|
||||
run1 := &model.RunDetail{
|
||||
Run: model.Run{
|
||||
|
|
|
|||
5
go.mod
5
go.mod
|
|
@ -25,13 +25,14 @@ require (
|
|||
github.com/go-openapi/swag v0.17.0
|
||||
github.com/go-openapi/validate v0.17.2
|
||||
github.com/go-sql-driver/mysql v1.4.0
|
||||
github.com/gogo/protobuf v1.1.1
|
||||
github.com/gogo/protobuf v1.1.1 // indirect
|
||||
github.com/golang/glog v0.0.0-20160126235308-23def4e6c14b
|
||||
github.com/golang/groupcache v0.0.0-20180513044358-24b0969c4cb7 // indirect
|
||||
github.com/golang/protobuf v1.2.0
|
||||
github.com/google/btree v0.0.0-20180124185431-e89373fe6b4a // indirect
|
||||
github.com/google/go-cmp v0.2.0
|
||||
github.com/google/gofuzz v0.0.0-20170612174753-24818f796faf // indirect
|
||||
github.com/google/ml-metadata v0.0.0-20190214221617-0fb82dc56ff7
|
||||
github.com/google/pprof v0.0.0-20181206194817-3ea8567a2e57 // indirect
|
||||
github.com/google/uuid v1.0.0
|
||||
github.com/googleapis/gnostic v0.2.0 // indirect
|
||||
|
|
@ -85,7 +86,7 @@ require (
|
|||
k8s.io/api v0.0.0-20180712090710-2d6f90ab1293
|
||||
k8s.io/apiextensions-apiserver v0.0.0-20190103235604-e7617803aceb // indirect
|
||||
k8s.io/apimachinery v0.0.0-20180621070125-103fd098999d
|
||||
k8s.io/apiserver v0.0.0-20190112184317-d55c9aeff1eb
|
||||
k8s.io/apiserver v0.0.0-20190112184317-d55c9aeff1eb // indirect
|
||||
k8s.io/client-go v0.0.0-20180718001006-59698c7d9724
|
||||
k8s.io/klog v0.1.0 // indirect
|
||||
k8s.io/kube-openapi v0.0.0-20180719232738-d8ea2fe547a4 // indirect
|
||||
|
|
|
|||
|
|
@ -92,6 +92,8 @@ github.com/google/go-cmp v0.2.0 h1:+dTQ8DZQJz0Mb/HjFlkptS1FeQ4cWSnN941F8aEG4SQ=
|
|||
github.com/google/go-cmp v0.2.0/go.mod h1:oXzfMopK8JAjlY9xF4vHSVASa0yLyX7SntLO5aqRK0M=
|
||||
github.com/google/gofuzz v0.0.0-20170612174753-24818f796faf h1:+RRA9JqSOZFfKrOeqr2z77+8R2RKyh8PG66dcu1V0ck=
|
||||
github.com/google/gofuzz v0.0.0-20170612174753-24818f796faf/go.mod h1:HP5RmnzzSNb993RKQDq4+1A4ia9nllfqcQFTQJedwGI=
|
||||
github.com/google/ml-metadata v0.0.0-20190214221617-0fb82dc56ff7 h1:Db+CbWW+XCYzfL662n+i2/xQGmLy4nRFFX3fEscNstk=
|
||||
github.com/google/ml-metadata v0.0.0-20190214221617-0fb82dc56ff7/go.mod h1:yO0xrdRxF2VbZGmBEPUsnKnANnPE/3kULpqDAFRPCmg=
|
||||
github.com/google/pprof v0.0.0-20181206194817-3ea8567a2e57/go.mod h1:zfwlbNMJ+OItoe0UupaVj+oy1omPYYDuagoSzA8v9mc=
|
||||
github.com/google/uuid v1.0.0 h1:b4Gk+7WdP/d3HZH8EJsZpvV7EtDOgaZLtnaNGIu1adA=
|
||||
github.com/google/uuid v1.0.0/go.mod h1:TIyPZe4MgqvfeYDBFedMoGGpEw/LqOeaOT+nhxU+yHo=
|
||||
|
|
|
|||
Loading…
Reference in New Issue